назад
TBLASTN 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= GLMU ECOLI
(456 letters)
Database: pm
204 sequences; 2,269,587 total letters
Searching.done
Score E
Sequences producing significant alignments: (bits) Value
embl|AE006217|AE006217 Pasteurella multocida subsp. multocida st... 639 0.0
embl|AE006146|AE006146 Pasteurella multocida subsp. multocida st... 41 2e-04
embl|AE006124|AE006124 Pasteurella multocida subsp. multocida st... 39 8e-04
embl|AE006160|AE006160 Pasteurella multocida subsp. multocida st... 37 0.003
embl|AE006102|AE006102 Pasteurella multocida subsp. multocida st... 37 0.003
embl|AE006236|AE006236 Pasteurella multocida subsp. multocida st... 29 0.62
embl|AE006089|AE006089 Pasteurella multocida subsp. multocida st... 28 1.1
embl|AE006040|AE006040 Pasteurella multocida subsp. multocida st... 25 6.8
>embl|AE006217|AE006217 Pasteurella multocida subsp. multocida str.
Pm70 section 184 of 204 of the complete genome.
Length = 12384
Score = 639 bits (1649), Expect = 0.0
Identities = 314/455 (69%), Positives = 370/455 (81%)
Frame = +3
Query: 1 MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGD 60
M A+S+VILAAGKGTRMYSDLPKVLH +AGK MV+HVID + A ++HLVYGHGG+
Sbjct: 5421 MKEKALSIVILAAGKGTRMYSDLPKVLHKIAGKPMVKHVIDTVKSIHAKNIHLVYGHGGE 5600
Query: 61 LLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDA 120
+++ L+D+ +NWVLQAEQLGTGHAMQQAAPFFADDE+ILMLYGD PLI+ ETLQ L A
Sbjct: 5601 VMQTRLQDEPVNWVLQAEQLGTGHAMQQAAPFFADDENILMLYGDGPLITAETLQTLIAA 5780
Query: 121 KPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADM 180
KP+ GI LLTV LDDPTGYGRI RENG V IVE KDA EQ +IQEINTG+L+A+G +
Sbjct: 5781 KPEHGIALLTVVLDDPTGYGRIVRENGNVVAIVEQKDANAEQLKIQEINTGLLVADGKSL 5960
Query: 181 KRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQ 240
K+WL++LTNNNAQGEYYITD+IALA Q+G ++VAV EVEGVNNR QL+RLER YQ
Sbjct: 5961 KKWLSQLTNNNAQGEYYITDVIALANQDGCQVVAVQASDFMEVEGVNNRQQLARLERYYQ 6140
Query: 241 SEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKN 300
+QA+ LLLAGV L DP RFDLRG L+HG+DVEID NVIIEG V+LGHRVKIG GCV+KN
Sbjct: 6141 RKQADNLLLAGVALADPERFDLRGELSHGKDVEIDVNVIIEGKVSLGHRVKIGAGCVLKN 6320
Query: 301 SVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSK 360
IGDD EI PY+V+E+A + A IGPF+RLRPG L + H+GNFVE+KKA +G GSK
Sbjct: 6321 CQIGDDVEIKPYSVLEEAIVGQAAQIGPFSRLRPGTALADNTHIGNFVEIKKAHIGTGSK 6500
Query: 361 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGAT 420
HL+Y+GDAE+G NIGAG ITCNYDGANKFKTIIGD+VFVGSD QLVAPVT+ GAT
Sbjct: 6501 VNHLSYVGDAEVGMQCNIGAGVITCNYDGANKFKTIIGDNVFVGSDVQLVAPVTIETGAT 6680
Query: 421 IAAGTTVTRNVGENALAISRVPQTQKEGWRRPVKK 455
I AGTTVT++V + L ISRVPQ +GW+RP K+
Sbjct: 6681 IGAGTTVTKDVACDELVISRVPQRHIQGWQRPTKQ 6785
>embl|AE006146|AE006146 Pasteurella multocida subsp. multocida str.
Pm70 section 113 of 204 of the complete genome.
Length = 10734
Score = 40.8 bits (94), Expect = 2e-04
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Frame = -1
Query: 345 GNFVEMKKARLGKGSKAG-HLTYL--GDAEIGDNV----NIGAGTITCNYDGANK----- 392
G F+E+ GK A H T L G +IGD+V N+ T+ D +
Sbjct: 9822 GQFIEV-----GKNFFANYHCTILDTGGVKIGDDVLFAPNVSLYTVGHPIDPELRKAEWE 9658
Query: 393 --FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQK 446
+IG++V++G + ++ VT+G I AG+ VT+++ N +A+ + Q+
Sbjct: 9657 QALPIVIGNNVWIGGNVVILGGVTIGDNTVIGAGSVVTKDIPANCVAVGNPCKVQR 9490
Score = 32.3 bits (72), Expect = 0.056
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSV------IGDDCEI 309
G +V I NV+I G VT+G IG G V+ + +G+ C++
Sbjct: 9636 GNNVWIGGNVVILGGVTIGDNTVIGAGSVVTKDIPANCVAVGNPCKV 9496
>embl|AE006124|AE006124 Pasteurella multocida subsp. multocida str.
Pm70 section 91 of 204 of the complete genome.
Length = 10585
Score = 38.5 bits (88), Expect = 8e-04
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Frame = -1
Query: 7 SVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQAL 66
+V+I A TR+ K L +AGK M+ HV + A + GA V + H
Sbjct: 4996 TVIIPARYASTRLPG---KPLAEIAGKPMIAHVFEKAMQSGAKRVIVATDHEQVATVARG 4826
Query: 67 KDDNLNWVLQAEQLGTGHAMQQAAPF-FADDEDILMLYGDVPLISVETLQRLRD--AKPQ 123
+ + Q GT + A+DE I+ + GD PLI ++++ + AK Q
Sbjct: 4825 FGAEVCMTSETHQSGTERLAEVVEKLGIAEDEIIVNIQGDEPLIPPAIVRQVAENLAKYQ 4646
Query: 124 GGIGLLTVKLDDP 136
+ L V + DP
Sbjct: 4645 VKMASLAVNITDP 4607
>embl|AE006160|AE006160 Pasteurella multocida subsp. multocida str.
Pm70 section 127 of 204 of the complete genome.
Length = 11080
Score = 36.6 bits (83), Expect = 0.003
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +2
Query: 390 ANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENAL 436
++K T+IG++V++G + ++ V +G GA I + VT+NV A+
Sbjct: 1676 SSKGDTVIGNEVWIGYNATIMPGVKIGDGAIIGTNSVVTKNVPPYAI 1816
>embl|AE006102|AE006102 Pasteurella multocida subsp. multocida str.
Pm70 section 69 of 204 of the complete genome.
Length = 12600
Score = 36.6 bits (83), Expect = 0.003
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Frame = -2
Query: 331 RLRPGAELLEGAHVG-NFVEMKK-----ARLGKGSKAGHLTYLGD-AEIGDNVNIGAGT- 382
R+ P A + +GA++ N V M AR+ +G+ +G A+IG NV++ G
Sbjct: 629 RVVPPAAVRKGAYIAKNTVLMPSYVNIGARVDEGTMVDTWATVGSCAQIGKNVHLSGGVG 450
Query: 383 ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 427
I + TII D+ F+G+ +++V V V +G+ I+ G +
Sbjct: 449 IGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 315
>embl|AE006236|AE006236 Pasteurella multocida subsp. multocida str.
Pm70 section 203 of 204 of the complete genome.
Length = 11371
Score = 28.9 bits (63), Expect = 0.62
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 274 IDTNVIIEGNVTLGHRVKIGTGCVIKNSVI 303
I+ NVII+ + H V IGTG + VI
Sbjct: 1344 IEDNVIIDNLCQIAHNVHIGTGTAVAGGVI 1433
>embl|AE006089|AE006089 Pasteurella multocida subsp. multocida str. Pm70
section 56 of 204 of the complete genome.
Length = 12519
Score = 28.1 bits (61), Expect = 1.1
Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 33/243 (13%)
Frame = +1
Query: 8 VVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAA---------NELG-----AAHVHL 53
V+ILA G+G+R+Y K + +ID A N +G AAH L
Sbjct: 11200 VLILAGGRGSRLYELTDKRAKPALYFGGNRRIIDFALSNCLNSGLNRIGVVTQYAAHSLL 11379
Query: 54 VYGHGGDLLKQALKDDNLNWVLQAEQL-------GTGHAMQQAAPFFAD---DEDILMLY 103
+ G A + + ++ + +Q+ GT A+ Q D + IL+L
Sbjct: 11380 RHLQNGWSFLPAERGEFIDMLPARQQIDDSTWYRGTADAVYQNMAIIRDHYCPKYILILA 11559
Query: 104 GDVPLISVETLQRLRDAKPQGG---IGLLTVKLDDPTGYG-RITRENGKVTGIVEHKDAT 159
GD + + Q L D G +G + V+ + T +G EN KV VE
Sbjct: 11560 GD-HIYKQDYSQMLLDHIHSGAKCTVGCIEVEREKATEFGVMAVNENLKVKSFVE--KPK 11730
Query: 160 DEQRQIQEINT-----GILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVA 214
D + + NT GI + + + L + ++ + DI+ A +EG ++
Sbjct: 11731 DPPAMVGKPNTSLASMGIYVFDADYLYDVLEREVSSPYTSHDFGKDILPKALEEG--VLY 11904
Query: 215 VHP 217
HP
Sbjct: 11905 AHP 11913
Score = 25.4 bits (54), Expect = 6.8
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Frame = +1
Query: 191 NAQGEYYITDIIALA--YQEGREIVAVHPQ-----RLSEVEGVNNRLQLSRLERVYQSEQ 243
N +GE Y D+ L +Q ++V +PQ + + G N +Q + Y+ E
Sbjct: 11938 NTEGEIYWRDVGTLDSFWQSNIDLVCENPQLDIYDQSWPIRG--NPVQTYPSKFFYKKEN 12111
Query: 244 AE----KLLLAGVMLRDPA-----RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGT 294
A L+ G ++ D + FD R + G ++ + ++ VT+G K+
Sbjct: 12112 ARPVDNSLISGGCVITDASISYSVLFD-RIKINEGSQID---HCVVLPQVTIGKNCKLKR 12279
Query: 295 GCVIKNSVIGDDCEI 309
+ ++SVI D EI
Sbjct: 12280 CIIDRHSVIPDGMEI 12324
>embl|AE006040|AE006040 Pasteurella multocida subsp. multocida str.
Pm70 section 7 of 204 of the complete genome.
Length = 10029
Score = 25.4 bits (54), Expect = 6.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 246 KLLLAGVMLRDPARFDLRG-TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKN 300
++ LA L + + RG + H RDVEI + G RVKI I+N
Sbjct: 5837 QVYLAQSTLAEAQKSQGRGHAVIHARDVEIKAGHVSNSGTLAGDRVKIEAEGKIQN 6004
Database: pm
Posted date: Nov 9, 2006 6:19 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204
Lambda K H
0.317 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 898,463
Number of Sequences: 204
Number of extensions: 10751
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 26
length of query: 456
length of database: 756,529
effective HSP length: 85
effective length of query: 371
effective length of database: 739,189
effective search space: 274239119
effective search space used: 274239119
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)